Bug 313720 - Molecular editor
Summary: Molecular editor
Status: RESOLVED FIXED
Alias: None
Product: kalzium
Classification: Applications
Component: general (show other bugs)
Version: 2.4.0
Platform: Ubuntu Linux
: NOR crash
Target Milestone: ---
Assignee: Kalzium Developers
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2013-01-23 00:52 UTC by Cesar
Modified: 2016-11-12 14:46 UTC (History)
2 users (show)

See Also:
Latest Commit:
Version Fixed In:
Sentry Crash Report:


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Description Cesar 2013-01-23 00:52:55 UTC
Application: kalzium (2.4.00)
KDE Platform Version: 4.8.5 (4.8.5)
Qt Version: 4.8.1
Operating System: Linux 3.2.0-36-generic x86_64
Distribution: Ubuntu 12.04.1 LTS

-- Information about the crash:
- What I was doing when the application crashed:
selected Hydrogen and then click the molecular editor on the menu

The crash can be reproduced every time.

-- Backtrace:
Application: Kalzium (kalzium), signal: Aborted
Using host libthread_db library "/lib/x86_64-linux-gnu/libthread_db.so.1".
[Current thread is 1 (Thread 0x7f7edab057c0 (LWP 4033))]

Thread 3 (Thread 0x7f7ec342d700 (LWP 4036)):
#0  0x00007f7ed573c303 in poll () from /lib/x86_64-linux-gnu/libc.so.6
#1  0x00007f7ed0dba036 in ?? () from /lib/x86_64-linux-gnu/libglib-2.0.so.0
#2  0x00007f7ed0dba49a in g_main_loop_run () from /lib/x86_64-linux-gnu/libglib-2.0.so.0
#3  0x00007f7ec343298b in ?? () from /usr/lib/x86_64-linux-gnu/gio/modules/libdconfsettings.so
#4  0x00007f7ed0ddb9e5 in ?? () from /lib/x86_64-linux-gnu/libglib-2.0.so.0
#5  0x00007f7ed543ee9a in start_thread () from /lib/x86_64-linux-gnu/libpthread.so.0
#6  0x00007f7ed5747cbd in clone () from /lib/x86_64-linux-gnu/libc.so.6
#7  0x0000000000000000 in ?? ()

Thread 2 (Thread 0x7f7ec2c2c700 (LWP 4037)):
#0  0x00007f7ed573c303 in poll () from /lib/x86_64-linux-gnu/libc.so.6
#1  0x00007f7ed0dba036 in ?? () from /lib/x86_64-linux-gnu/libglib-2.0.so.0
#2  0x00007f7ed0dba49a in g_main_loop_run () from /lib/x86_64-linux-gnu/libglib-2.0.so.0
#3  0x00007f7ec766a406 in ?? () from /usr/lib/x86_64-linux-gnu/libgio-2.0.so.0
#4  0x00007f7ed0ddb9e5 in ?? () from /lib/x86_64-linux-gnu/libglib-2.0.so.0
#5  0x00007f7ed543ee9a in start_thread () from /lib/x86_64-linux-gnu/libpthread.so.0
#6  0x00007f7ed5747cbd in clone () from /lib/x86_64-linux-gnu/libc.so.6
#7  0x0000000000000000 in ?? ()

Thread 1 (Thread 0x7f7edab057c0 (LWP 4033)):
[KCrash Handler]
#6  0x00007f7ed568a425 in raise () from /lib/x86_64-linux-gnu/libc.so.6
#7  0x00007f7ed568db8b in abort () from /lib/x86_64-linux-gnu/libc.so.6
#8  0x00007f7ed8bd4f29 in Avogadro::GLWidget::initializeGL() () from /usr/lib/libavogadro.so.1
#9  0x00007f7ed8bd45fb in Avogadro::GLWidget::paintEvent(QPaintEvent*) () from /usr/lib/libavogadro.so.1
#10 0x00007f7ed74960f6 in QWidget::event (this=0x329a960, event=0x7fff0e9727f0) at kernel/qwidget.cpp:8508
#11 0x00007f7ed7f78208 in QGLWidget::event (this=0x329a960, e=0x7fff0e9727f0) at qgl.cpp:4407
#12 0x00007f7ed7445894 in notify_helper (e=0x7fff0e9727f0, receiver=0x329a960, this=0x214d470) at kernel/qapplication.cpp:4559
#13 QApplicationPrivate::notify_helper (this=0x214d470, receiver=0x329a960, e=0x7fff0e9727f0) at kernel/qapplication.cpp:4531
#14 0x00007f7ed744a713 in QApplication::notify (this=0x7fff0e973520, receiver=0x329a960, e=0x7fff0e9727f0) at kernel/qapplication.cpp:4420
#15 0x00007f7ed69753f6 in KApplication::notify(QObject*, QEvent*) () from /usr/lib/libkdeui.so.5
#16 0x00007f7ed6f22e9c in QCoreApplication::notifyInternal (this=0x7fff0e973520, receiver=0x329a960, event=0x7fff0e9727f0) at kernel/qcoreapplication.cpp:876
#17 0x00007f7ed7491d96 in sendSpontaneousEvent (event=0x7fff0e9727f0, receiver=0x329a960) at ../../include/QtCore/../../src/corelib/kernel/qcoreapplication.h:234
#18 QWidgetPrivate::drawWidget (this=0x329a9c0, pdev=0x329a970, rgn=..., offset=..., flags=3, sharedPainter=0x0, backingStore=0x0) at kernel/qwidget.cpp:5585
#19 0x00007f7ed765d787 in QWidgetPrivate::repaint_sys (this=0x329a9c0, rgn=...) at painting/qbackingstore.cpp:1656
#20 0x00007f7ed7488a64 in QWidgetPrivate::syncBackingStore (this=0x329a9c0) at kernel/qwidget.cpp:1888
#21 0x00007f7ed749660c in QWidget::event (this=0x329a960, event=0x3e36fe0) at kernel/qwidget.cpp:8655
#22 0x00007f7ed7f78208 in QGLWidget::event (this=0x329a960, e=0x3e36fe0) at qgl.cpp:4407
#23 0x00007f7ed7445894 in notify_helper (e=0x3e36fe0, receiver=0x329a960, this=0x214d470) at kernel/qapplication.cpp:4559
#24 QApplicationPrivate::notify_helper (this=0x214d470, receiver=0x329a960, e=0x3e36fe0) at kernel/qapplication.cpp:4531
#25 0x00007f7ed744a713 in QApplication::notify (this=0x7fff0e973520, receiver=0x329a960, e=0x3e36fe0) at kernel/qapplication.cpp:4420
#26 0x00007f7ed69753f6 in KApplication::notify(QObject*, QEvent*) () from /usr/lib/libkdeui.so.5
#27 0x00007f7ed6f22e9c in QCoreApplication::notifyInternal (this=0x7fff0e973520, receiver=0x329a960, event=0x3e36fe0) at kernel/qcoreapplication.cpp:876
#28 0x00007f7ed6f26c6a in sendEvent (event=0x3e36fe0, receiver=0x329a960) at ../../include/QtCore/../../src/corelib/kernel/qcoreapplication.h:231
#29 QCoreApplicationPrivate::sendPostedEvents (receiver=0x0, event_type=0, data=0x20f51f0) at kernel/qcoreapplication.cpp:1500
#30 0x00007f7ed6f51f93 in sendPostedEvents () at ../../include/QtCore/../../src/corelib/kernel/qcoreapplication.h:236
#31 postEventSourceDispatch (s=<optimized out>) at kernel/qeventdispatcher_glib.cpp:279
#32 0x00007f7ed0db9d53 in g_main_context_dispatch () from /lib/x86_64-linux-gnu/libglib-2.0.so.0
#33 0x00007f7ed0dba0a0 in ?? () from /lib/x86_64-linux-gnu/libglib-2.0.so.0
#34 0x00007f7ed0dba164 in g_main_context_iteration () from /lib/x86_64-linux-gnu/libglib-2.0.so.0
#35 0x00007f7ed6f523bf in QEventDispatcherGlib::processEvents (this=0x20f6ad0, flags=...) at kernel/qeventdispatcher_glib.cpp:424
#36 0x00007f7ed74edd5e in QGuiEventDispatcherGlib::processEvents (this=<optimized out>, flags=...) at kernel/qguieventdispatcher_glib.cpp:204
#37 0x00007f7ed6f21c82 in QEventLoop::processEvents (this=<optimized out>, flags=...) at kernel/qeventloop.cpp:149
#38 0x00007f7ed6f21ed7 in QEventLoop::exec (this=0x7fff0e9734b0, flags=...) at kernel/qeventloop.cpp:204
#39 0x00007f7ed6f26f67 in QCoreApplication::exec () at kernel/qcoreapplication.cpp:1148
#40 0x000000000045377f in main (argc=5, argv=0x7fff0e973d18) at ../../src/main.cpp:102

Possible duplicates by query: bug 307663.

Reported using DrKonqi
Comment 1 Jekyll Wu 2013-01-24 11:33:31 UTC
> #8  0x00007f7ed8bd4f29 in Avogadro::GLWidget::initializeGL() () from /usr/lib/libavogadro.so.1
>#9  0x00007f7ed8bd45fb in Avogadro::GLWidget::paintEvent(QPaintEvent*) () from /usr/lib/libavogadro.so.1

That looks like a problem of libavogadro and OpenGL. Could you compile libavogadro. with debug symbols  and provide a better backtrace ?
Comment 2 Aleksej 2015-08-16 15:33:35 UTC
Another report: bug 326837.
Comment 3 Andreas Cord-Landwehr 2016-11-12 14:46:41 UTC
The molecule editor was ported to Avogadro 2 for the upcoming Kalzium release in December (KDE Applications 16.12). With that version I cannot reproduce the bug.