Created attachment 122724 [details]
krita palette to reproduce the above mentioned swatch bug

SUMMARY
(git714a51bdd0)

With a specific palette (attached), some swatches left open(empty/blank/no color) are replaced by black, nameless swatches on re-opening krita.

Noticed this shortly after updating to the nightly-stable build(git714a51bdd0) from the 4.2.6 release.

STEPS TO REPRODUCE
1. load palette 'basic_4' (attached)
2. in the palette, delete some of (as many as you like) the black swatches in the top 2 rows of the 'Col' group so that they are empty.
3. close and re-open krita.

OBSERVED RESULT
The swatches previously deleted are now occupied with black(0/0/0).
These 'new' black swatches have no ID or Swatch Group Name.
Empty swatches on the bottom of the palette are not 'filled' this way.

EXPECTED RESULT
expected the empty swatches to stay empty.

SOFTWARE/OS VERSIONS
Windows:
macOS: 
Linux/KDE Plasma: 
(available in About System)
KDE Plasma Version: 
KDE Frameworks Version: 
Qt Version: 

ADDITIONAL INFORMATION

1 monitor.

Krita
  Version: 4.2.6 (git 714a51b)

Qt
  Version (compiled): 5.12.5
  Version (loaded): 5.12.5

OS Information
  Build ABI: x86_64-little_endian-llp64
  Build CPU: x86_64
  CPU: x86_64
  Kernel Type: winnt
  Kernel Version: 10.0.18362
  Pretty Productname: Windows 10 (10.0)
  Product Type: windows
  Product Version: 10


OpenGL Info
 
  Vendor:  "Google Inc." 
  Renderer:  "ANGLE (Intel(R) HD Graphics 4000 Direct3D11 vs_5_0 ps_5_0)" 
  Version:  "OpenGL ES 3.0 (ANGLE 2.1.0.57ea533f79a7)" 
  Shading language:  "OpenGL ES GLSL ES 3.00 (ANGLE 2.1.0.57ea533f79a7)" 
  Requested format:  QSurfaceFormat(version 3.0, options QFlags<QSurfaceFormat::FormatOption>(DeprecatedFunctions), depthBufferSize 24, redBufferSize 8, greenBufferSize 8, blueBufferSize 8, alphaBufferSize 8, stencilBufferSize 8, samples -1, swapBehavior QSurfaceFormat::DoubleBuffer, swapInterval 0, colorSpace QSurfaceFormat::DefaultColorSpace, profile  QSurfaceFormat::CompatibilityProfile) 
  Current format:    QSurfaceFormat(version 3.0, options QFlags<QSurfaceFormat::FormatOption>(), depthBufferSize 24, redBufferSize 8, greenBufferSize 8, blueBufferSize 8, alphaBufferSize 8, stencilBufferSize 8, samples 0, swapBehavior QSurfaceFormat::DefaultSwapBehavior, swapInterval 0, colorSpace QSurfaceFormat::DefaultColorSpace, profile  QSurfaceFormat::NoProfile) 
     Version: 3.0
     Supports deprecated functions false 
     is OpenGL ES: true 

QPA OpenGL Detection Info 
  supportsDesktopGL: true 
  supportsAngleD3D11: true 
  isQtPreferAngle: false 
== log ==
 Supported renderers: QFlags(0x2|0x4|0x8) 
Surface format preference list: 
* QSurfaceFormat(version 3.0, options QFlags<QSurfaceFormat::FormatOption>(DeprecatedFunctions), depthBufferSize 24, redBufferSize 8, greenBufferSize 8, blueBufferSize 8, alphaBufferSize 8, stencilBufferSize 8, samples -1, swapBehavior QSurfaceFormat::DoubleBuffer, swapInterval 0, colorSpace QSurfaceFormat::DefaultColorSpace, profile  QSurfaceFormat::CompatibilityProfile) 
    4 
* QSurfaceFormat(version 3.0, options QFlags<QSurfaceFormat::FormatOption>(DeprecatedFunctions), depthBufferSize 24, redBufferSize 8, greenBufferSize 8, blueBufferSize 8, alphaBufferSize 8, stencilBufferSize 8, samples -1, swapBehavior QSurfaceFormat::DoubleBuffer, swapInterval 0, colorSpace QSurfaceFormat::DefaultColorSpace, profile  QSurfaceFormat::CompatibilityProfile) 
    2 
* QSurfaceFormat(version 3.0, options QFlags<QSurfaceFormat::FormatOption>(DeprecatedFunctions), depthBufferSize 24, redBufferSize 16, greenBufferSize 16, blueBufferSize 16, alphaBufferSize 16, stencilBufferSize 8, samples -1, swapBehavior QSurfaceFormat::DoubleBuffer, swapInterval 0, colorSpace QSurfaceFormat::scRGBColorSpace, profile  QSurfaceFormat::CompatibilityProfile) 
    4 
* QSurfaceFormat(version 3.0, options QFlags<QSurfaceFormat::FormatOption>(DeprecatedFunctions), depthBufferSize 24, redBufferSize 10, greenBufferSize 10, blueBufferSize 10, alphaBufferSize 2, stencilBufferSize 8, samples -1, swapBehavior QSurfaceFormat::DoubleBuffer, swapInterval 0, colorSpace QSurfaceFormat::bt2020PQColorSpace, profile  QSurfaceFormat::CompatibilityProfile) 
    4 
* QSurfaceFormat(version 3.0, options QFlags<QSurfaceFormat::FormatOption>(DeprecatedFunctions), depthBufferSize 24, redBufferSize 16, greenBufferSize 16, blueBufferSize 16, alphaBufferSize 16, stencilBufferSize 8, samples -1, swapBehavior QSurfaceFormat::DoubleBuffer, swapInterval 0, colorSpace QSurfaceFormat::scRGBColorSpace, profile  QSurfaceFormat::CompatibilityProfile) 
    2 
* QSurfaceFormat(version 3.0, options QFlags<QSurfaceFormat::FormatOption>(DeprecatedFunctions), depthBufferSize 24, redBufferSize 10, greenBufferSize 10, blueBufferSize 10, alphaBufferSize 2, stencilBufferSize 8, samples -1, swapBehavior QSurfaceFormat::DoubleBuffer, swapInterval 0, colorSpace QSurfaceFormat::bt2020PQColorSpace, profile  QSurfaceFormat::CompatibilityProfile) 
    2 
* QSurfaceFormat(version 3.0, options QFlags<QSurfaceFormat::FormatOption>(DeprecatedFunctions), depthBufferSize 24, redBufferSize 8, greenBufferSize 8, blueBufferSize 8, alphaBufferSize 8, stencilBufferSize 8, samples -1, swapBehavior QSurfaceFormat::DoubleBuffer, swapInterval 0, colorSpace QSurfaceFormat::DefaultColorSpace, profile  QSurfaceFormat::CompatibilityProfile) 
    8 
* QSurfaceFormat(version 3.0, options QFlags<QSurfaceFormat::FormatOption>(DeprecatedFunctions), depthBufferSize 24, redBufferSize 16, greenBufferSize 16, blueBufferSize 16, alphaBufferSize 16, stencilBufferSize 8, samples -1, swapBehavior QSurfaceFormat::DoubleBuffer, swapInterval 0, colorSpace QSurfaceFormat::scRGBColorSpace, profile  QSurfaceFormat::CompatibilityProfile) 
    8 
* QSurfaceFormat(version 3.0, options QFlags<QSurfaceFormat::FormatOption>(DeprecatedFunctions), depthBufferSize 24, redBufferSize 10, greenBufferSize 10, blueBufferSize 10, alphaBufferSize 2, stencilBufferSize 8, samples -1, swapBehavior QSurfaceFormat::DoubleBuffer, swapInterval 0, colorSpace QSurfaceFormat::bt2020PQColorSpace, profile  QSurfaceFormat::CompatibilityProfile) 
    8 
Probing format... QSurfaceFormat::DefaultColorSpace 4 
Found format: QSurfaceFormat(version 3.0, options QFlags<QSurfaceFormat::FormatOption>(DeprecatedFunctions), depthBufferSize 24, redBufferSize 8, greenBufferSize 8, blueBufferSize 8, alphaBufferSize 8, stencilBufferSize 8, samples -1, swapBehavior QSurfaceFormat::DoubleBuffer, swapInterval 0, colorSpace QSurfaceFormat::DefaultColorSpace, profile  QSurfaceFormat::CompatibilityProfile) 
    4 
 
== end log == 

Hardware Information
 Memory: 3 Gb
 Cores: 4
 Swap: C:/Users/kaj/AppData/Local/Temp