to reproduce: 1. start the process of binding a key or key combo to any action, for example by clicking with the mouse on a GUI binding button 2. hold down the Hyper key (specifically, the key emits keysym 0xffee, defined in /usr/include/X11/keysym.h as Hyper_R, as the output of /usr/bin/xev confirms) observed result: the GUI binding button's text changes to "Meta+ ..." expected result: the GUI binding button's text changes to "Hyper+ ..." Likewise, holding the Super key (keysym 0xffeb, Super_L) is also misidentified as Meta. The other modifier keys Ctrl, Shift, Alt, Meta work fine, though.
Qt does not differentiate between Super/Hyper/Meta. They all mean the "Windows" key. http://doc.qt.io/qt-5/qt.html#KeyboardModifier-enum