Hey, here is a fresh critical bug ( in my opinion a release blocker for 2.9.6 ... :-/  ). It affect the transform tool really badly when working with multiple layer. 

* How to reproduce :
Setup :
1. Open a fresh Krita document
2. On a new layer trace a black square with the square tool
3. On a new layer trace a red circle with the circle tool ( outside the black square )
4. On a new layer trace a blue circle with the circle tool ( outside the black square too ). 
Trigger :
5. Select the transform tool , and try to fit the blue and red circle in the black square with transform tool only, switch layer with the layer docker. 

* Result :
6. As you'll switch layer, the position of element will be reset, sometime will just go offset of the canvas, but nothing will be backed. All keep moving. 

* Workaround :
Extremely extremely annoying :D Duplicate the layer after the transform is done, and remove the layer under ( original ). That should 'bake' the transform. 

* Reproducible : 
Always.

* Note : 
The 'continuous' transform was added in 2.9 / master two days ago or so. Can we get longer beta-test time before a release ? Thank you :)