Especially soon after triggering a mail retrieval from my POP3 accounts I have it that KMail is unresponsive. Reproducible: Sometimes Steps to Reproduce: 1. Have an POP3 account with LKML and some other high volume lists. 2. Let it pile up mails over night. 3. Retrieve messages the next morning Actual Results: Sometimes KMail / Akonadi server doesn´t respond in a timely manner. Examples: 1) I click on a message in the message list. In the message reader pane KMail shows that it retrieves the message for minutes. 2) I click on a folder, like inbox, with about some thousand mails and it just shows the spinning wheel before the folder name for minutes Expected Results: On an ThinkPad T520 with Intel Sandybridge i5-2520M 2,5GHz, that the ThinkPad lets overtact itself to about 3/3.2 GHz for extended period of times hyperthreaded dual core CPU, 8 GB of RAM, and an 300 GB SATA 300 Intel SSD 320 I expect reactions to user input in KMail to be about instant at all times, except for maybe really large folders, where it may take some seconds. During this behaviour I get stuff like the following in ~/.xsession-errors: ItemRetrieverException : Unable to retrieve item from resource: Did not receive a reply. Possible causes include: the remote application did not s end a reply, the message bus security policy blocked the reply, the reply timeout expired, or the network connection was broken. kmail2(13538)/libakonadi Akonadi::EntityTreeModelPrivate::fetchJobDone: Job error: "Unable to fetch item from backend (collection 35) : Unable to retrieve item from resource: Did not receive a reply. Possible causes include: the remote application did not send a reply, the message bus securit y policy blocked the reply, the reply timeout expired, or the network connection was broken." for collection: 35 ItemRetrieverException : Unable to retrieve item from resource: Did not receive a reply. Possible causes include: the remote application did not s end a reply, the message bus security policy blocked the reply, the reply timeout expired, or the network connection was broken. kmail2(13538)/libakonadi Akonadi::EntityTreeModelPrivate::fetchJobDone: Job error: "Unable to fetch item from backend (collection 35) : Unable to retrieve item from resource: Did not receive a reply. Possible causes include: the remote application did not send a reply, the message bus securit y policy blocked the reply, the reply timeout expired, or the network connection was broken." for collection: 35 This morning I also have: kmail2(13538)/libakonadi Akonadi::EntityTreeModelPrivate::monitoredItemChanged: Got a stale notification for an item which was already removed. 447 047 "1365845303.R253.merkaba" After some minutes now things have settled down and I am able to see the new mail again. During this occurence often the system is not fully under load. It was using "only" about 2 of the 4 logical cores of the CPU. And it wasn´t using all of the availble SSD bandwidth / IOPS. Thus I suspect some issue with communiction between different components of Akonadi / KMail / Nepomuk. While this doesn´t make the software completely unusable, I think its still more than Normal in severity. Well, you choose. This may be related to: [Bug 318234] New: KMail sometimes does not update source folder view on move or mark operations unless restarted I use the following setup: 1) I had all mails in ~/Mail 2) I moved all recent mails from ~/Mail to a newly created BTRFS subvolume ~/.Mail so that I can snapshot it. I moved all the archived mails to ~/.Mail-Archiv, as these are mbox folders. 3) Then I let the migrator run so that it puts my account information into kmail2rc. 4) For each POP3 account I use I created an extra maildir agent pointing it at the maildir and then selecting "Synchronize All" in Akonadiconsole. Thus for my main account Lichtvoll I gave it ~/.Mail/Lichtvoll as maildir directory for example: drwx------ 1 martin martin 18 Apr 11 08:33 Lichtvoll drwx------ 1 martin martin 4106 Apr 11 17:28 .Lichtvoll.directory -rw------- 1 martin martin 4312743 Apr 11 08:33 .Lichtvoll.index -rw------- 1 martin martin 33909 Apr 11 08:33 .Lichtvoll.index.ids For local mails I created: drwx------ 1 martin martin 18 Jan 2 11:36 Lokal drwxr-xr-x 1 martin martin 528 Apr 11 09:50 .Lokal.directory and copied all the local mail folders into that. 5) I imported my filter rules back to this new setup, set inboxes for mail download to the right top level maildir directories and so on. Size of setup: martin@merkaba:~> find ~/.Mail | wc -l 431234 martin@merkaba:~> du -sh ~/.Mail 6,5G /home/martin/.Mail The KDEPIM-2 packages are from Debian developers, but they are not publically available in official Debian repositories. I test them for for them. martin@merkaba:~> apt-show-versions | egrep "(kdepim|korganizer|kmail|knode|kaddressbook|zanshin|akonadi|nepomuk|strigi|virtuoso|soprano|libqt)" akonadi-backend-mysql/experimental uptodate 1.9.1-2 akonadi-backend-postgresql/experimental uptodate 1.9.1-2 akonadi-backend-sqlite/experimental uptodate 1.9.1-2 akonadi-server/experimental uptodate 1.9.1-2 akonadiconsole 4:4.10.2-0r4 newer than version in archive kaddressbook 4:4.10.2-0r4 newer than version in archive kaddressbook-mobile 4:4.10.2-0r4 installed: No available version in archive kdegraphics-strigi-analyzer/sid uptodate 4:4.8.4-1 kdepim 4:4.10.2-0r4 newer than version in archive kdepim-dbg 4:4.10.2-0r4 newer than version in archive kdepim-kresources 4:4.10.2-0r4 newer than version in archive kdepim-mobileui-data 4:4.10.2-0r4 installed: No available version in archive kdepim-runtime/experimental uptodate 4:4.10.2-1 kdepim-strigi-plugins 4:4.10.2-0r4 newer than version in archive kdepimlibs-dbg/experimental uptodate 4:4.10.2-1 kdepimlibs-kio-plugins/experimental uptodate 4:4.10.2-1 kdesdk-strigi-plugins/sid uptodate 4:4.8.4+dfsg-1 kmail 4:4.10.2-0r4 newer than version in archive kmail-mobile 4:4.10.2-0r4 installed: No available version in archive knode 4:4.10.2-0r4 newer than version in archive korganizer 4:4.10.2-0r4 newer than version in archive korganizer-mobile 4:4.10.2-0r4 installed: No available version in archive libakonadi-calendar4/experimental uptodate 4:4.10.2-1 libakonadi-contact4/experimental uptodate 4:4.10.2-1 libakonadi-kabc4/experimental uptodate 4:4.10.2-1 libakonadi-kcal4/experimental uptodate 4:4.10.2-1 libakonadi-kde4/experimental uptodate 4:4.10.2-1 libakonadi-kmime4/experimental uptodate 4:4.10.2-1 libakonadi-notes4/experimental uptodate 4:4.10.2-1 libakonadi-socialutils4/experimental uptodate 4:4.10.2-1 libakonadiprotocolinternals1/experimental uptodate 1.9.1-2 libkdepim4 4:4.10.2-0r4 newer than version in archive libkdepimdbusinterfaces4 4:4.10.2-0r4 installed: No available version in archive libkdepimmobileui4 4:4.10.2-0r4 installed: No available version in archive libnepomuk4/experimental uptodate 4:4.10.2-2 libnepomukcore4/experimental uptodate 4:4.10.2-1 libnepomukquery4a/experimental uptodate 4:4.10.2-2 libnepomukutils4/experimental uptodate 4:4.10.2-2 libnepomukwidgets4/experimental uptodate 4:4.10.2-1 libqt4-dbg/sid uptodate 4:4.8.2+dfsg-11 libqt4-dbus/sid uptodate 4:4.8.2+dfsg-11 libqt4-declarative/sid uptodate 4:4.8.2+dfsg-11 libqt4-designer/sid uptodate 4:4.8.2+dfsg-11 libqt4-dev/sid uptodate 4:4.8.2+dfsg-11 libqt4-dev-bin/sid uptodate 4:4.8.2+dfsg-11 libqt4-help/sid uptodate 4:4.8.2+dfsg-11 libqt4-network/sid uptodate 4:4.8.2+dfsg-11 libqt4-opengl/sid uptodate 4:4.8.2+dfsg-11 libqt4-qt3support/sid uptodate 4:4.8.2+dfsg-11 libqt4-script/sid uptodate 4:4.8.2+dfsg-11 libqt4-scripttools/sid uptodate 4:4.8.2+dfsg-11 libqt4-sql/sid uptodate 4:4.8.2+dfsg-11 libqt4-sql-mysql/sid uptodate 4:4.8.2+dfsg-11 libqt4-sql-psql/sid uptodate 4:4.8.2+dfsg-11 libqt4-sql-sqlite/sid uptodate 4:4.8.2+dfsg-11 libqt4-svg/sid uptodate 4:4.8.2+dfsg-11 libqt4-test/sid uptodate 4:4.8.2+dfsg-11 libqt4-xml/sid uptodate 4:4.8.2+dfsg-11 libqt4-xmlpatterns/sid uptodate 4:4.8.2+dfsg-11 libqtassistantclient4/sid uptodate 4.6.3-4 libqtcore4/sid uptodate 4:4.8.2+dfsg-11 libqtdbus4/sid uptodate 4:4.8.2+dfsg-11 libqtglib-2.0-0/sid uptodate 0.10.2-2 libqtgstreamer-0.10-0/sid uptodate 0.10.2-2 libqtgstreamerui-0.10-0/sid uptodate 0.10.2-2 libqtgui4/sid uptodate 4:4.8.2+dfsg-11 libqtlocation1/sid uptodate 1.2.0-3 libqtruby4shared2/sid uptodate 4:4.8.4-1 libqtscript4-core/sid uptodate 0.2.0-1 libqtscript4-gui/sid uptodate 0.2.0-1 libqtscript4-network/sid uptodate 0.2.0-1 libqtscript4-sql/sid uptodate 0.2.0-1 libqtscript4-uitools/sid uptodate 0.2.0-1 libqtscript4-xml/sid uptodate 0.2.0-1 libqtwebkit-dev/sid uptodate 2.2.1-5 libqtwebkit4/sid uptodate 2.2.1-5 libqtwebkit4-dbg/sid uptodate 2.2.1-5 libqtxdg0/sid uptodate 0.4.1-2 libsmokeakonadi3/sid uptodate 4:4.8.4-1 libsmokenepomuk3/sid uptodate 4:4.8.4-1 libsmokesoprano3/sid uptodate 4:4.8.4-1 libsoprano-dev/experimental uptodate 2.9.0+dfsg1-1 libsoprano4/experimental uptodate 2.9.0+dfsg1-1 nepomuk-core-data/experimental uptodate 4:4.10.2-1 nepomuk-core-runtime/experimental uptodate 4:4.10.2-1 ruby-akonadi/sid uptodate 4:4.8.4-1 ruby-soprano/sid uptodate 4:4.8.4-1 soprano-daemon/experimental uptodate 2.9.0+dfsg1-1 virtuoso-minimal/experimental-snapshots uptodate 6.1.6+dfsg1-0r1 virtuoso-opensource-6.1-bin/experimental-snapshots uptodate 6.1.6+dfsg1-0r1 virtuoso-opensource-6.1-common/experimental-snapshots uptodate 6.1.6+dfsg1-0r1 zanshin/sid uptodate 0.2.1-1+b1
Created attachment 78858 [details] xsession-errors of the last occurence of this slow responding in KMail after triggering POP3 retrieval Usernames of POP3 replaced by nothing.
Secondary issues seen in ~/.xsession-errors: Bug 318283 - KMail/libakonadi: Got a stale notification for an item which was already removed Bug 318284 - Messages like 'Payload file "[…].local/share/akonadi/file_db_data/797210_r0" is missing, trying to recover.'
According to akonadiconsole in those circumstances often my biggest maildir resource lichtvoll stalls synchronization at some random folder. It then sits there for minutes to come, even if its just a smaller folder it got stuck at. Thus I suspect a communication issue between the different components involved. Also adding versions of dbus packages to the mix: martin@merkaba:~> apt-show-versions | grep "dbus" dbus/sid uptodate 1.6.8-1 dbus-x11/sid uptodate 1.6.8-1 libdbus-1-3/sid uptodate 1.6.8-1 libdbus-1-dev/sid uptodate 1.6.8-1 libdbus-c++-1-0/sid uptodate 0.9.0-6 libdbus-glib-1-2/sid uptodate 0.100.2-1 libdbusmenu-glib4/sid uptodate 0.6.2-1 libdbusmenu-qt2/sid uptodate 0.9.0-1 libkdepimdbusinterfaces4 4:4.10.2-0r4 installed: No available version in archive libnet-dbus-perl/sid uptodate 1.0.0-2 libqt4-dbus/sid uptodate 4:4.8.2+dfsg-11 libqtdbus4/sid uptodate 4:4.8.2+dfsg-11 libsmokeqtdbus4-3/sid uptodate 4:4.8.4-1 python-dbus/sid uptodate 1.1.1-1 python-dbus-dev/sid uptodate 1.1.1-1 python-qt4-dbus/sid uptodate 4.9.3-4 qdbus/sid uptodate 4:4.8.2+dfsg-11 Maybe these deadlocks with some MySQL queries are also related: martin@merkaba:~/KDE/Bugs/318281 KMail doesn´t respond: ItemRetrieverException : Unable to retrieve item from resource> xzgrep -i "dead" xsession-errors.txt.xz Error during executing query "UPDATE PimItemTable SET atime = :0 WHERE ( ( PimItemTable.id = :1 ) )" : "Deadlock found when trying to get lock; try restarting transaction QMYSQL3: Unable to execute statement" [… some PlaneShift game client related messages …] Error during executing query "UPDATE PimItemTable SET atime = :0 WHERE ( ( PimItemTable.id = :1 ) )" : "Deadlock found when trying to get lock; try restarting transaction QMYSQL3: Unable to execute statement" MySQL has been at 100% during that POP 3 download but it often uses more than that. Dunno whether there has been something going on single-threadedly. I have mytop and mysql client installed and can try to have a closer look at whats going on. One of those is also in the shortened xsession-errors-edited.txt I attached. I am hesitant to attach the whole xsession-errors.txt cause Akonadi Nepomuk Feeder or probably some other component as well puts lots of private informations in it, included complete mail text which just don´t have anything to do in this file. Anyway version of MySQL packages involved: martin@merkaba:~> apt-show-versions | grep mysql akonadi-backend-mysql/experimental uptodate 1.9.1-2 kexi-mysql-driver/sid uptodate 1:2.4.4-3 libdbd-mysql-perl/sid uptodate 4.021-1+b1 libmysqlclient-dev/sid uptodate 5.5.30+dfsg-1 libmysqlclient18/sid uptodate 5.5.30+dfsg-1 libqt4-sql-mysql/sid uptodate 4:4.8.2+dfsg-11 mysql-client/sid uptodate 5.5.30+dfsg-1 mysql-client-5.5/sid uptodate 5.5.30+dfsg-1 mysql-common/sid uptodate 5.5.30+dfsg-1 mysql-server-core-5.5/sid uptodate 5.5.30+dfsg-1 python-mysqldb/sid uptodate 1.2.3-2
I can confirm this behavior with kde master compiled over debian stable.
Does this still happen to you? If you can still reproduce the database deadlock, when it happens again, please do the following: Open Akonadi Console and in DB Console tab, run "SHOW ENGINE INNODB STATUS". This should reveal what queries are deadlocking and we can optimize them to avoid this happening in future.
Dan, I don´t seem to see this anymore with KMail 4.12.2 and Akonadi 1.11.0 – Akonadi still isn´t exactly very responsive while doing stuff in the background (see bug #331848), but that ItemRetrieverException does not seem to appear anymore: martin@merkaba:~> ls -lh .xsession-errors -rw------- 1 martin martin 1,5M Mär 7 14:19 .xsession-errors martin@merkaba:~> grep -i "Did not receive a reply" .xsession-errors martin@merkaba:~#1> grep -i "ItemRetrieverException" .xsession-errors Thus closing. Luisfe, if you still see it, please reopen. Thanks, Martn